PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma11g00170.1
Common NameZOSMA_11G00170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 503aa    MW: 54920.2 Da    PI: 5.0439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma11g00170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11316358754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Zosma11g00170.1 316 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 358
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16312378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9315358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15316371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.31E-13316362No hitNo description
CDDcd048732.72E-5430471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MLPRMSNVGW VAEEEEEGGE DGSGTVPDVS WSRTNGTCDF RYEMGLTSFK SMLEDDWYLP  60
NQLHTQQQQD VKSVISFPSD PSPPNGESLI LQKQCSSSSV FNLDPSHSFF SQKNNTLTSL  120
LNTVCSSSNP FDSPGFDLGY DASGFLSGPP ISDSSVLLNR SCDDGGNDSG ILGFDEMGSS  180
DLARPLEFIS TGFDQHHHHH QSMVFGALNN LPLSNANHRS SKLLQPLDMF SSGVSQPTFS  240
QKRVASLRRS SMLDEGGNID GGSFLNYDSD EVVTEIVKAE ENGDNDDGRQ KESNAQSTTT  300
EERKGKRKGL PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ  360
RINDLHNELE SSSSSSPSPT SCPSLRPSLP TPLTLPCRVK EELYSSSSST PTTQSSTVEV  420
RVREGGTVNI HMFCVRRPGL LLSTMRALDG MGLDIQQAVI SCFNGFALDV LRAEQCKDGP  480
GVPPDDIKTV LLHSAGLHGS LI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305323KRKGLPAKNLMAERRRRKK
2317324ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3932236e-33FJ393223.1 Glycine max inducer of CBF expression 1 (ICE1) mRNA, complete cds.
GenBankHM9899266e-33HM989926.1 Glycine max ICEb mRNA, complete cds.
GenBankKT0311056e-33KT031105.1 Glycine max clone HN_CCL_147 bHLH transcription factor (Glyma04g37750.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249206.11e-134PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-111ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0K9Q1200.0A0A0K9Q120_Z
STRINGGSMUA_Achr11P09640_0011e-118(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.43e-95bHLH family protein